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Simbiome is a curated, online electronic resource that organizes and presents relevant resources for physics-based simulation of biomedical structures and related entities in biology and life sciences.
Proshape
Stanford University, Duke University, University of California, Davis
Computational techniques for simulating, analyzing and visualizing protein structures
http://csb.stanford.edu/~koehl/ProShape/
| Software: Algorithm or Reusable Library | |
It is widely believed that the geometry of a protein plays a crucial role in its folding process as well as in its interactions with other bio-molecules or small ligands, yet geometrical methods are still uncommon in computational biology because several unresolved representational and algorithmic issues remain. ProShape is designed to provide answers to some of these issues. ProShape is an ongoing effort, whose aim is to develop new computational techniques for simulating, analyzing and visualizing protein structures. It will provide access to new software whose aim is to help structural biologists with their research. | |
| Development Stage | 3 - Beta |
| Keywords | proteins, structure calculation, shape, surface, volume |
| Size Scale | 1 - Atomic / Molecular |
| License | GNU Library or Lesser General Public License (LGPL) |
| Operating System | 1 - OS Portable (Source code to work with many OS platforms) |
| Resources with Similar Function | SURFNET |
| Related Resources | Search Google |
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This work is licensed under a Creative Commons Attribution 2.5 License.