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Modeller

University of California, San Francisco

Homology or comparative modeling of protein three-dimensional structures

http://salilab.org/modeller/

Summary Assembled by Curation Team

Software: Simulation Application
MODELLER is used for homology or comparative modeling of protein three-dimensional structures (1). The user provides an alignment of a sequence to be modeled with known related structures and MODELLER automatically calculates a model containing all non-hydrogen atoms. MODELLER implements comparative protein structure modeling by satisfaction of spatial restraints (2, 3), and can perform many additional tasks, including de novo modeling of loops in protein structures, optimization of various models of protein structure with respect to a flexibly defined objective function, multiple alignment of protein sequences and/or structures, clustering, searching of sequence databases, comparison of protein structures, etc. MODELLER is written in Fortran 90 and runs on Pentium PC`s (Linux and Win XP), Itanium 2 and x86_64 (Linux), Apple Macintosh (OS X) and workstations from Silicon Graphics (IRIX), Sun (Solaris), IBM (AIX), and DEC Alpha (Tru64).
Development Stage	4 - Development with public userbase
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Last Updated on: May 01, 2006 Page hits 581, Clicks 288, Version (0)

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