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Simbiome is a curated, online electronic resource that organizes and presents relevant resources for physics-based simulation of biomedical structures and related entities in biology and life sciences.
Yale Morph server
2D and 3D animations of a plausible or semi-plausible pathway between two submitted protein subunit conformations
http://www.molmovdb.org/morph/
| Web / Online Resource | |
This server will produce 2D and 3D animations of a plausible or semi-plausible pathway between two submitted protein subunit conformations. You may provide either a pair of PDB identifiers, or structures uploaded from your web browser, or a combination of the two to morph. This process may take anywhere from five minutes to half an hour to complete, depending on the size of the structures and the load on the server. You will receive notification by email when your morph is complete. There are currently three forms of the server. The original version handles mutations, missing atoms and residues, and even homologous structures. This is the recommended version to use, especially if you are morphing structures taken directly from the PDB. We have recently implemented a new server currently being tested that allows morphing of large complexes, with mutations and/or deletions. An older version of this is still available if you want to morph nucleic acids; this will be phased out in the near future. | |
| Development Stage | 5 - Production/Stable |
| Keywords | |
| Resources with Similar Function | |
| Related Resources | Dali Search Google |
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This work is licensed under a Creative Commons Attribution 2.5 License.