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Simbiome is a curated, online electronic resource that organizes and presents relevant resources for physics-based simulation of biomedical structures and related entities in biology and life sciences.

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GROMACS

Stockholm Bioinformatics Center, Stockholm University

Molecular Dynamics Simulation

http://www.gromacs.org/


Summary Assembled by Curation Team
Software: Simulation Application

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.

It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non-biological systems, e.g. polymers.

Development Stage 5 - Production/Stable
Keywords
Size Scale 1 - Atomic / Molecular
Support 2 - Organized User base / Mailing lists
License GNU General Public License (GPL)
Operating System 2 - All POSIX (Linux/BSD/UNIX-like OSes)
Mailing List Url http://www.gromacs.org/mailing_lists/index.php
Documentation Url http://www.gromacs.org/documentation/index.php
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Last Updated on: May 27, 2008 Page hits 645, Clicks 222, Version 3 (3)

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