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Simbiome is a curated, online electronic resource that organizes and presents relevant resources for physics-based simulation of biomedical structures and related entities in biology and life sciences.
GROMACS
Stockholm Bioinformatics Center, Stockholm University
Molecular Dynamics Simulation
http://www.gromacs.org/
| Software: Simulation Application | |
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non-biological systems, e.g. polymers. | |
| Development Stage | 5 - Production/Stable |
| Keywords | |
| Size Scale | 1 - Atomic / Molecular |
| Support | 2 - Organized User base / Mailing lists |
| License | GNU General Public License (GPL) |
| Operating System | 2 - All POSIX (Linux/BSD/UNIX-like OSes) |
| Mailing List Url | http://www.gromacs.org/mailing_lists/index.php |
| Documentation Url | http://www.gromacs.org/documentation/index.php |
| Resources with Similar Function | |
| Related Resources | LAMMPS Molecular Dynamics Simulator TINKER Amber - Molecular Dynamics Amber Force Fields CHARMM NAMD NAST VMD Search Google |
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