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Simbiome is a curated, online electronic resource that organizes and presents relevant resources for physics-based simulation of biomedical structures and related entities in biology and life sciences.
SMILES Toolkit
Programming environment supporting molecular objects and the SMILES language
http://www.daylight.com/products/smiles_kit.html
| Software: Algorithm or Reusable Library | |
The SMILES Toolkit is a programming library which provides basic functions needed for chemical information processing. Molecules and molecular constituents (atoms, bonds, cycles) are treated as abstract objects and are operated on by polymorphic functions (e.g. create, copy, modify, enumerate, destroy, etc.). The SMILES Toolkit also supports a number of utility objects (streams, sequences, paths, substructs). Reactions are fully integrated into the SMILES toolkit and handled polymorphically by addition of the Reaction Toolkit license. This toolkit provides the most current SMILES language, a simplified yet comprehensive chemical nomenclature. A unique SMILES can be generated to be used as a lexical identifier. Version 4.x SMILES provides full support for organic, inorganic, isotopic, and general (not limited to tetrahedral) chiral specifications, including partially specified chirality. The SMILES Toolkit is the basis for all other Daylight 4.x Toolkits. It is written to be system- and language-independent, and makes full use of dynamic memory allocation. Wrappers are provided for C, C++, and Fortran compilers supplied with most Unix platforms. Wrappers for other languages are available by special request. | |
| Development Stage | 4 - Development with public userbase |
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