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Simbiome is a curated, online electronic resource that organizes and presents relevant resources for physics-based simulation of biomedical structures and related entities in biology and life sciences.
NAMD
Parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems
http://www.ks.uiuc.edu/Research/namd/
| Software: Simulation Application | |
NAMD, recipient of a 2002 Gordon Bell Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of processors on high-end parallel platforms and tens of processors on commodity clusters using gigabit ethernet. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-compatible with AMBER, CHARMM, and X-PLOR. NAMD is distributed free of charge with source code. You can build NAMD yourself or download binaries for a wide variety of platforms. Our tutorials show you how to use NAMD and VMD for biomolecular modeling. | |
| Development Stage | 4 - Development with public userbase |
| Keywords | |
| License | Other - not listed here |
| Resources with Similar Function | |
| Related Resources | TINKER VMD GROMACS NAST LAMMPS Molecular Dynamics Simulator CHARMM Amber - Molecular Dynamics Amber Force Fields Search Google |
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